Accepted Posters

Below is the list of so far accepted posters. There is still possibility of submitting late posters, however there are only few spaces left and we cannot guarantee the presence of late poster abstracts in the abstract book.

178 Soo Young Cho, Young Seek Lee, Soojun Park and Je Kyung Seong. Target Gene Selection System for Human Disease Related Mouse Models
184 Osval Antonio Montesinos López and Emeterio Franco Pérez. Threshold models for genome-enabled prediction of ordinal categorical traits in plant breeding
190 Chen-Hsiang Yeang, Yen-Fu Chen, Kai-Neng Chuang, Chih-Hsu Lin and Shery Yen. Alternative definitions of UGA codon regulated by translational regulatory factors and selenium
217 David Seifert, Francesca Di Giallonardo, Karin J. Metzner, Huldrych F. Günthard and Niko Beerenwinkel. A Framework for Inferring Fitness Landscapes of Patient-Derived Viruses Using Quasispecies Theory
219 Mani P. Grover. Identification of novel therapeutics for complex diseases from genome-wide association data
220 Vivekanand A, Reshmi G and M. Radhakrishana Pillai. miRBP: An architecture to find competitive interaction between microRNA and RNA binding proteins
221 Leszek Pryszcz and Toni Gabaldón. Redundans: an assembly pipeline for highly heterozygous genomes
223 Marius Mihasan. Molecular classification and comparative analysis of Arthrobacter genus plasmids
224 Szymon Wasik and Jacek Blazewicz. Trochilus – a platform for evaluation of algorithms that find values of real parameters
225 Marcin Borowski, Tomasz Głowacki and Piotr Formanowicz. Heuristic approach for peptide assembly problem
226 Natalia Szóstak, Agnieszka Rybarczyk, Marta Szachniuk and Jacek Błażewicz. Sorting signals targeting mRNA into hepatic extracellular vesicles
227 Marzena Dolbniak, Roman Jaksik, Joanna Rzeszowska-Wolny and Krzysztof Fujarewicz. A model for the effects of ionizing radiation on microRNA-mediated regulation of mRNA levels in cells
229 Maciej Antczak, Tomasz Zok, Martin Riedel, David Nebel, Piotr Lukasiak, Marta Szachniuk, Thomas Villmann and Jacek Blazewicz. Accurate prediction of nucleotide conformations
230 Eugene Bolotin, Chenxi Chen, Apoorva Dhabalia and Jane Su. Illumina-NextBio Body Atlas now features RNA-seq data.
231 Rafal Zaborowski, Torgeir Hvidsten and Bartek Wilczyński. Genes co-localization in topologically associating domains indicates higher co-expression
232 Marta Wiśniewska, Adam Liwo and Mariusz Makowski. Analytical Formulas for the Potentials of Mean Force of the Interaction of O-phosphorylated and Hydrophobic Amino-Acid Side Chains in Water
233 Benedikt Zacher, Michael Lidschreiber, Patrick Cramer, Julien Gagneur and Achim Tresch. Annotation of genomics data by the bidirectional hidden Markov model unveils variations in Pol II transcription cycle
234 Paweł Bednarz and Bartek Wilczynski. Integrative computational model for tissue specific gene regulation
235 Nadav Brandes and Michal Linial. Overlapping Genes in Viruses: Seeking a Unified Theory
236 Jakub Rydzewski, Wieslaw Nowak and Giuseppe Nicosia. Inferring normal and pathological states in cortical neuron circuit model by Sensitivity Analysis algorithms
237 Byungwook Lee. Protein sequence comparison using domain-based approaches
238 Jonathan Crowther, Yanyan Cai, Layka Abbasi, Stein Aerts and Anna Sablina. The Role of Chromosomal Deletions as Prognostic Markers of Drug Sensitivity
239 Vân Anh Huynh-Thu and Guido Sanguinetti. Combining tree-based and dynamical systems for the inference of gene regulatory networks
240 Albert Herencsár, Krzysztof Piecuch and Broňa Brejová. An Improved Algorithm for Ancestral Gene Order Reconstruction
241 Marta Kulik, Takaharu Mori, Yuji Sugita and Joanna Trylska. The Dynamics of the N1 Riboswitch Interacting with Aminoglycoside Antibiotics
242 Przemysław Gagat, Andrzej Bodył and Paweł Mackiewicz. Bioinformatics studies of protein translocons in photosynthetic organelles of the testate amoeba Paulinella chromatophora
243 Karel Břinda, Valentina Boeva and Gregory Kucherov. RNF: a method and tools to evaluate NGS read mappers
244 Julian Zubek, Adam Boniecki, Maciej Mnich, Marcin Tatjewski, Subhadip Basu and Dariusz Plewczynski. Multi-level machine learning prediction of protein-protein interactions
245 Michal Burdukiewicz, Piotr Sobczyk, Paweł Błażej and Paweł Mackiewicz. Predicting eukaryotic signal peptides using hidden Markov models
246 Maciej Baranowski and Stanisław Ołdziej. Substrate recognition by Hsp40 chaperones - molecular dynamics studies.
247 Piotr Sobczyk, Michał Burdukiewicz, Chris Lauber and Paweł Mackiewicz. Quick Permutation Test: feature filtering of n-gram data
248 Piotr Posacki. Monte Carlo simulations of mammalian sex chromosomes evolution.
249 Maciej Jasiński, Anna Górska and Joanna Trylska. Analysis of RNA thermodynamics using Motif Identifier for Nucleic Acid Trajectory
250 Małgorzata Grabińska, Pawel Blazej and Paweł Mackiewicz. Application of Monte Carlo simulations and Metropolis-Hastings algorithm in analysis of mutation accumulation in three codon positions of protein coding sequences
251 Magdalena Żulpo and Malgorzata Kotulska. Modeling hypothetical amyloid pores
252 Pascal St-Onge, Mathieu Lajoie, Patrick Beaulieu, Simon Drouin, Jasmine Healy and Daniel Sinnett. A Framework For High Throughput Sequencing Analysis Of Childhood Leukemia
253 Dmitry Podolsky, Ivan Molodtcov, Alexander Zenin, Valeria Kogan, Andrey Tarkhov, Leonid Menshikov, Robert J Shmookler Reis and Peter Fedichev. Critical dynamics of gene networks is behind ageing and Gompertz law
254 Tomasz Zok, Maciej Antczak, Mariusz Popenda, Piotr Lukasiak, Ryszard Adamiak, Jacek Blazewicz and Marta Szachniuk. RNApdbee - secondary structure retrieval from knotted and unknotted RNA structures
255 Insu Jang and Byungwook Lee. An introduction to miRseqViewer: Visualization tool for microRNA analysis
256 Małgorzata Wnętrzak, Paweł Błażej and Paweł Mackiewicz. Optimality of the canonical genetic code under multiobjective and mutually exclusive criteria
257 Aleksandra Kroczak, Adam Urantówka and Paweł Mackiewicz. Influence of methods and molecular markers’ selection on inferring phylogenetic relationships in the example of parrots from tribe Arini
258 Ilona Grabowicz and Bartek Wilczyński. Outlier sample detection and exclusion improves differential gene expression analysis
259 Amit Frishberg and Irit Gat-Viks. Computational prediction of changes in quantities of immune cell types
260 Paweł Woźniak and Małgorzata Kotulska. AMYload – web service dedicated to amyloidogenic proteins.
261 Klev Diamanti, Husen M. Umer, Marcin Kruczyk, Marco Cavalli, Claes Wadelius and Jan Komorowski. Detection of putative regulatory regions and genomic signal interactions
262 Avital Brodt, Maya Botzman, Eyal David and Irit Gat-Viks. Dissecting Dynamic Genetic Variation that Controls Temporal Gene Response in Yeast
263 Uma Shankavaram, Orieta Celiku, Xiang Deng, Shuping Zhao, Anita Tandle and Kevin Camphausen. Drug Response Modeling of Cancer using Network Pharmacology
264 Tom Harel and Irit Gat-Viks. Combining genetic polymorphisms with inherited variation in gene expression to explain organismal physiological traits:
265 Ewa Golas, Adam Liwo, Harold A. Scheraga, Cezary Czaplewski and Jaroslaw Marszalek. The ClpB disaggregase: molecular dynamics simulation of a re-modelling machine
266 Anna Gogolinska and Wieslaw Nowak. Petri Nets as a Novel Representation of Biomolecular Simulations Data
267 Magdalena Ochab and Krzysztof Puszynski. Mathematical model of the p53-dependent apoptotic pathway abnormalities in the non-small cell lung cancer
268 Agnieszka G. Lipska, Steve R. Seidman, Harold A Scheraga and Adam Liwo. Implementation of hydrodynamic interactions in molecular dynamics simulations with the UNRES force field
269 Dorota Formanowicz, Agnieszka Rybarczyk, Marcin Radom and Piotr Formanowicz. A role of inflammation and immunity in essential hypertension and cardiovascular disease – modeled and analyzed using Petri nets
270 Dorota Formanowicz, Marcin Radom, Agnieszka Rybarczyk and Piotr Formanowicz. The importance of iron in the process of atherosclerosis modeled by Petri net based approach
271 Vladimír Boža, Jakub Jursa, Broňa Brejová and Tomas Vinar. Efficient Indexing of Read Collections for Likelihood Computation
272 Mitra Kabir, Andrew J. Doig and Kathryn E. Hentges. The relationship between duplication and essentiality for mammalian genes
273 Agnieszka Karczyńska, Paweł Krupa, Magdalena Mozolewska and Adam Liwo. Assessment of the resolution of the UNRES force field with structure-based restraints.
274 Mark Rogers, Hashem Shihab, Julian Gough, Matthew Mort, David Cooper, Ian Day, Tom Gaunt and Colin Campbell. Predicting the functional impact of genetic sequence variation in human disease
275 Bence Szalai, Susanne Prokop, Miklós Cserző, Péter Várnai and László Hunyady. Co-evolution and co-expression based analysis and prediction of G Protein-coupled receptor heterodimerization
276 Robert Schöpflin and Martin Vingron. Identification of cis-regulatory elements from chromosome conformation capture data
277 Karol Nienałtowski and Michał Komorowski. Efficient experimental design for systems biology dynamical models
278 Krzysztof Gogolewski, Michał Startek, Dariusz Grzebelus, Arnaud Le Rouzic and Anna Gambin. The potential role of transposable elements as evolutionary helpers in sexual populations - the computational model.
279 Wayne Dawson, Michal Boniecki and Janusz Bujnicki. An entropy model for ranking structures and measuring flexibility in 3D RNA simulations using SimRNA
280 Sahar Ansari, Michele Donato and Sorin Draghici. Inferring disease mechanisms from multiple gene expression datasets using PPI
281 Michal J. Dabrowski, Michal Draminski, Klev Diamanti, Jacek Koronacki and Jan Komorowski. Discovering interdependencies in genomic data and the case of immune system genes
282 Marcin Tatjewski, Julian Zubek, Marcin Kierczak and Dariusz Plewczyński. Towards discovering key factors in prediction of post-translational modifications
283 Dennis Wang, Sara Dempster and Nirmal Keshava. Approaches for integrative clustering of cancer cell lines for evaluation of therapeutic response
284 Luis Zapata, Hana Susak, Oliver Drechsel and Stephan Ossowski. Signatures of positive selection reveal driver genes across multiple cancer types
285 Shamba Mondal, Yiliang Wei, David Arnosti and Bartek Wilczynski. Computational analysis of sequence motifs for discriminating different ChIP-exo profiles of related RBF proteins
286 Peter Hansen, Jochen Hecht, Daniel Ibrahim, Alexander Krannich and Peter N. Robinson. Q - A saturation-based peak caller for reproducible analysis of transcription factor binding sites
287 Xi Gao and Tomasz Arodz. Combining biological networks with ensemble learning for analyzing molecular profiles
288 Michelle Flowers, Kristin Helling, Jing Zhang and John Karro. POSTER: Identifying strand-symmetry reversal in the human genome
289 Dorota Mackiewicz and Stanisław Cebrat. Non-random distribution of recombination hotspot motifs in human genome
290 Mina Maleki, Mohammad Haj Dezfulian and Luis Rueda. Computational modeling of the effect of amino acid substitutions on the formation of Ubiquitin-based complexes
291 Bartłomiej Zaborowski, Dawid Jagieła, Adam Sieradzan, Cezary Czaplewski, Anna Hałabis, Agnieszka Lewandowska, Wioletta Żmudzińska, Stanisław Ołdziej and Adam Liwo. A maximum-likelihood approach to force-field training for protein structure prediction and folding simulations
292 Abed Alkhateeb, Siva Reddy, Iman Rezaeian, Urvashi Katiyar, Dina Maskoni, John Kelly, Dora Cavallo-Medved, Lisa Porter and Luis Rueda. Analysis of Novel mRNA Transcripts in Prostate Cancer
293 Adam Sieradzan, Nevena Litova, Adam Liwo and Antti Niemi. How do loops form in proteins? A key to protein folding?
294 Agata Charzyńska and Anna Gambin. Global sensitivity analysis based on knn-estimators for information theoretic measures
295 Marcin Pacholczyk, Karolina Smolińska and Marek Kimmel. Computational method for modeling and testing of transcription factor binding sites
296 Vladimir Shchur and Richard Durbin. Tree consistent PBWT and their application to reconstructing Ancestral Recombination Graphs and demographic inference
297 Nathanael Fillmore, Bo Li, Yongsheng Bai, Mike Collins, James Thompson, Ron Stewart and Colin Dewey. Evaluation of de novo transcriptome assemblies from RNA-Seq data
298 Aleksander Jankowski, Jerzy Tiuryn and Shyam Prabhakar. MOCCA: Accurate identification of transcription factor binding sites from DNase-seq data
299 Bogumil Konopka, Rafal Roszak and Malgorzata Kotulska. Protein Contact Ontology - a tool for annotation of protein residue-residue contacts
301 Atefeh Taherian Fard, Sriganesh Srihari, Jessica C Mar and Mark A Ragan. Modeling the landscape of cellular development using the Hopfield network
302 Shaun D Jackman, Karthika Raghavan, Benjamin P Vandervalk, Daniel Paulino, Justin Chu, Hamid Mohamadi, Anthony Raymond, René L Warren and Inanç Birol. Scaling ABySS to longer reads using spaced k-mers and Bloom filters
303 Mateusz Krzysztof Łącki and Anna Gambin. Localised Fine Structure in Mass Spectrometry
304 Witold Rudnicki, Szymon Migacz, Antoni Rościszewski, Andrzej Sułecki, Łukasz Grad, Magdalena Zaremba and Paweł Tabaszewski. Feature Selection Server
305 Maciej Dziubinski, Pawel Daniluk and Bogdan Lesyng. ResiCon: a web service for the identification of dynamic domains, hinges and interfacial regions in proteins
306 Ewa Szczurek, Tyll Krüger and Niko Beerenwinkel. The bottleneck of metastasis formation: insights from a stochastic model
307 Karel Břinda, Maciej Sykulski and Gregory Kucherov. Spaced seeds improve metagenomic classification
308 Weronika Sikora-Wohlfeld, Abhi K. Basu, Monica Martinez-Canales and Atul J. Butte. Utilizing the Intel Genomics Reference Architecture for Analyzing Genome Sequencing Data
309 Nadav Rappoprt and Michal Linial. Entropy-driven partitioning of the hierarchical protein space
310 Beata Sokołowska, Krystiana Krzyśko, Irena Niebroj-Dobosz, Marta Hallay-Suszek, Łukasz Charzewski, Agnieszka Madej-Pilarczyk, Michał Marchel, Irena Hausmanowa-Petrusewicz and Bogdan Lesyng. The statistical and MM/MD molecular modeling of MMP-TIMP system can be helpful in distinction of EDMD forms and healthy controls
311 Anna Cichonska, Juho Rousu, Pekka Marttinen, Antti J Kangas, Pasi Soininen, Terho Lehtimäki, Olli T Raitakari, Marjo-Riitta Järvelin, Veikko Salomaa, Mika Ala-Korpela, Samuli Ripatti and Matti Pirinen. Multivariate Meta-Analysis of Genome-Wide Association Studies using Univariate Summary Statistics
312 Michał Ciach and Anna Muszewska. Searching for Horizontal Gene Transfer events in fungal genomes
313 Marcin Świstak, Magdalena Szuplewska and Dariusz Bartosik. Genomic analysis of plasmids pJ2P1 and pK8P1 from Antarctic strains of Pseudomonas spp.
314 Chang Pyo Hong, Dongsung Ryu, Sanghoon Song and Junsu Ko. Genome-wide Analysis of DNA Methylation in Human Breast Cancer Cells through Targeted Methyl-Seq
315 Agata Dziedzic and Anna Muszewska. Serine protease evolution in fungi with variable lifestyles
316 Konrad Dębski, Katja Kobow, Anna Bot, Noora Huusko, Mark Ziemann, Antony Kaspi, Assam El-Osta, Ingmar Blumcke, Asla Pitkänen and Katarzyna Łukasiuk. Comparison of DNA methylation events in three animal models of temporal lobe epilepsy
318 Witold Rudnicki, Teresa Mroczek and Paweł Cudek. Amino Acid Properties Conserved in Molecular Evolution
319 Yingying Wei, Toyoaki Tenzen and Hongkai Ji. Joint Analysis of Differential Gene Expression in Multiple Studies using Correlation Motifs
320 Wojciech Labaj and Andrzej Polanski. Gene signature optimization based on improved method for enrichment analysis
321 Alon Diament and Tamir Tuller. Accounting for biases in riboprofiling data indicates a correlation between typical codon decoding rates and tRNA copy numbers
322 Mateusz Kurcinski, Michal Jamroz, Maciej Blaszczyk, Andrzej Kolinski and Sebastian Kmiecik. CABS-dock web server for flexible docking of peptides to proteins without prior knowledge of the binding site
323 Michał Startek, Arnaud Le Rouzic and Gambin Anna. Optimal mutation rates for adaptation in Fisher's geometric model with environmental stress.
324 Uzma Mahmood and Zaheer Ul-Haq. Docking based 3D-QSAR studies applied at the BRAF inhibitors to understand the binding mechanism
325 Joanna Zyla, Marzena Dolbniak, Christophe Badie, Ghazi Alsbeih and Joanna Polanska. Trend control focused integration in modeling of genotype-phenotype interactions
326 Justyna Kotas, Christophe Badie, Serge Candéias and Joanna Polańska. Usage of bootstrap sampling in comparing biological diversity of differently sized data samples
327 Prashanthi Dharanipragada and Nita Parekh. Copy Number Variation Analysis of Diffuse Large B-Cell Lymphoma (DLBCL) Subtypes
328 Shah Md. Shahik and Ismot Ara. In Silico Homology Modeling, Functional annotation and Molecular Docking Studies of hypothetical proteins of Aspergillus fumigatusAf293.
329 Damian Wójtowicz, Fedor Kouzine, Arito Yamane, Craig J. Benham, Rafael C. Casellas, David Levens and Teresa M. Przytycka. Genome-wide mapping and computational analysis of non-B DNA structures in vivo
330 Jaroslaw Paszek and Paweł Górecki. Episode clustering problems for unrooted gene trees
331 Agnieszka Mykowiecka and Paweł Górecki. Towards more realistic tree reconciliation
332 Rafal Jakubowski, Lukasz Peplowski and Wieslaw Nowak. On the nature of potential energy surface in autism related synaptic protein NRX-NLG complex
333 Anil Raj, Sidney Wang, Heejung Shim, Yang Li, Matthew Stephens, Yoav Gilad and Jonathan Pritchard. Accurate inference of thousands of novel translated open reading frames and dually coded regions using ribosome footprinting data.
334 Magdalena A. Machnicka, Katarzyna H. Kaminska, Stanislaw Dunin-Horkawicz and Janusz M. Bujnicki. Sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes
335 Samuel Handelman, Michal Seweryn, Andrzej Kloczkowski and Wolfgang Sadee. Building a consensus co-expression network for CNS genes relevant to pharmacogenomics
336 Agnieszka Blachowicz, Soile Tapio, Zarko Barjaktarovic, Rafi Benotmane, Rosemary Finnon, Christophe Badie, Simon Bouffler and Joanna Polanska. DATA DRIVEN ESTIMATION OF CUTOFFs IN SEARCHING FOR DIFFERENTIALLY EXPRESSED PROTEINS
337 Katherine Hartmann and Michał Seweryn. Variability of protein coding and non-coding co-expression patterns
338 Franciszek Binczyk, Cristian Weber, Michael Götz, Bram Stjeltjes, Klaus Maier-Hein, Hans-Peter Meinzer, Rafal Tarnawski, Barbara Bobek-Billewicz and Joanna Polanska. Determination of high-grade brain tumours internal structure based on magnetic resonance diffusion imaging and signal decomposition to Gaussian mixture model.
340 Michael Schwemmer and Michal Seweryn. Maximum Renyi Entropy models with higher order interactions in genomics
341 Imene Boudellioua, Rabie Saidi, Maria Martin and Victor Soloviev. Association Rule Mining for Metabolic Pathway Prediction
342 Mateusz Garbulowski and Andrzej Polański. Methods of identification and analysis of errors in shotgun sequencing data
343 Aleksandra Gruca, Marek Sikora and Łukasz Stypka. Expert-driven validation, interpretation and functional description of gene sets.
344 Harriet Mellenius and Måns Ehrenberg. Modeling of transcriptional accuracy suggests two-step proofreading by RNA polymerase
345 Julia Herman-Izycka and Bartek Wilczynski. Identifying tissue specific enhancers by sequence and histone modifications - a machine learning approach
346 Mohammed El-Kebir, Layla Oesper, Hannah Acheson-Field and Ben Raphael. Reconstruction of clonal trees and tumor composition from multi-sample cancer sequencing data
347 Tymoteusz Oleniecki, Maciej Dziubiński, Grzegorz Firlik, Agnieszka Mykowiecka and Paweł Daniluk. PyDesc: a framework for structural analysis of biopolymers
348 Paweł P. Łabaj and David P. Kreil. Power and Limitations of RNA-Seq: Findings from the SEQC (MAQC-III) consortium
349 Rafael Zambrano, Michal Jamroz, Agata Szczasiuk, Jordi Pujols, Sebastian Kmiecik and Salvador Ventura. Aggrescan3D web server for protein aggregation prediction taking into account protein structure and its dynamic fluctuations
350 Agnieszka Mykowiecka, Tymoteusz Oleniecki, Maciej Dziubiński and Paweł Daniluk. Describing tertiary RNA structure with local spatial motifs
351 Roman Jaksik and Krzysztof Puszyński. Solvary: a tool for the study of complex intracellular signalling pathways
352 Behrooz Torabi Moghadam, Michal Dabrowski, Bozena Kaminska, Manfred Grabherr and Jan Komorowski. A multivariate approach predicts genes that change in DNA methylation patterns over age in the human brain
353 Alessandro Mammana and Ho-Ryun Chung. Improved chromatin segmentation with a probabilistic model for read counts
354 Anna Macioszek, Anna Fogtman, Aleksandra Kwiatkowska, Maciej Kotliński, Roksana Iwanicka-Nowicka, Andrzej Jerzmanowski, Marta Koblowska and Bartek Wilczyński. Bioinformatic analysis of ChIP-seq data on epigenetic response to salt stress in Arabidopsis thaliana
355 Aleksandra Jarmolińska and Joanna I Sulkowska. Knot position within a protein, a DCA approach
356 Lukasz Kozlowski and Janusz Bujnicki. Identification of potential protelomerases and their target sites in publicly available genomes. Phylogenetics analysis
357 Joanna Sulkowska. KnotProt: a database of proteins with knots and slipknots
358 Sandra Smieszek and Bartlomiej Przychodzen. How progressive cis element combinations classify conserved orthogonal plant circadian transcriptional modules
359 Michał Boniecki, Grzegorz Łach, Konrad Tomala, Wayne Dawson, Paweł Łukasz, Tomasz Sołtysiński, Kristian Rother and Janusz Bujnicki. SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction.
360 Aleksandra Dawid and Dominik Gront. Cartesian Rotamers Library for protein structure prediction.
361 Michał Woźniak, Limsoon Wong and Jerzy Tiuryn. Tree-generalized hypergeometric score for detection of drug resistance-associated mutations
362 Tomasz Jetka, Tomasz Winarski and Michał Komorowski. Measuring information transmission from single-cell heterogenous dynamical responses
363 Alex Salo, Steven Gonzales, Kathy Grant and Erich Baker. Automated predication of drinking categories in monkeys undergoing chronic alcohol self-administration
364 Young Park, Sunhye Park, Yoon Cho, Kiejung Park and Insong Koh. A pilot study for the construction of Korean-specific exome-variome database
365 Linda K. Sundermann, Amit G. Deshwar, Quaid Morris and Gunnar Rätsch. Onctopus: A New Model for Subclonal Composition Reconstruction
366 Norbert Dojer, Abhishek Mitra, Yea-Lih Lin, Anna Kubicka, Magdalena Skrzypczak, Krzysztof Ginalski, Philippe Pasero and Maga Rowicka. Computational detection of DNA double-stranded breaks with nucleotide resolution using deep sequencing data
367 Prajwal Devkota, Bonnie Kirkpatrick, Susan Blanton and Alexandre Bouchard-Cote. Correcting for Cryptic Relatedness in Genome-Wide Association Studies
368 Junil Kim, Jeong-Rae Kim and Seong-Jin Kim. Mathematical model of human gene regulatory network
369 Maga Rowicka, Norbert Dojer, Ji Li, Yea-Lih Lin, Magdalena Skrzypczak, Anna Kubicka, Krzysztof Ginalski and Philippe Pasero. Inferring direction of replication fork and mechanism of DNA damage using sequencing data
370 Cheng Zhao, Ying Li, Benjamin Haibe-Kains and Anna Goldenberg. Using cell lines and patient samples to improve patients’ drug response prediction
371 Daria Iakovishina, Mireille Regnier, Valentina Boeva and Emmanuel Barillot. SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability
372 Serghei Mangul, Farhad Hormozdiari, Elizabeth Tseng, Alex Zelikovsky and Eleazar Eskin. (Poster) HapIso : An accurate method for the haplotype-specific isoforms reconstruction from long single-molecule reads
374 Wolfgang Kopp and Martin Vingron. A Bayesian model for the number of motif hits in finite double-stranded DNA sequences
375 Ilona Foik, Irina Tuszynska, Marcin Feder, Elżbieta Purta and Janusz Bujnicki. Novel inhibitors of ErmC’ methyltransferase responsible for resistance to MLSB antibiotics
377 Jonas A. Sibbesen, Lasse Maretty and Anders Krogh. Probabilistic genotyping without alignment
378 Mohammadhossein Moeinzadeh, Jun Yang and Martin Vingron. Haplotype reconstruction for polyploid organisms
379 Bartosz Wojtas, Bartlomiej Gielniewski, Marta Maleszewska, Mateusz Bujko, Janusz Siedlecki, Katarzyna Kotulska, Wieslawa Grajkowska and Bozena Kaminska. Targeted enrichment sequencing of the large genomic region in glioblastoma
380 Isaac Joseph, Shannon McCurdy, Joseph F. Costello and Lior Pachter. A method for combining multiple genomic and clinical datatypes to predict recurrence grade in gliomas
382 Matt Huska and Martin Vingron. The DNA sequence features of non-methylated islands across six vertebrates
383 Dominik Gront. Three dimensional threading for protein structure modelling
385 Przemek Biecek. A more powerful test for identification of differentially methylated regions
386 Sergiy Ancherbak, Ercan Kuruoglu and Martin Vingron. Time-varying Gene Interaction Network Modeling by Sequential Monte Carlo